
BDP R6G carboxylic acid | CAS 174881-57-3
| Catalog Number | F01-0016 |
| Category | BODIPY |
| Molecular Formula | C18H15BF2N2O2 |
| Molecular Weight | 340.13 |
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Product Introduction
BDP R6G is a borondipyrromethene dye, an analog of BODIPY® R6G. The fluorophore has absorption and emission spectra resembling R6G rhodamine. The carboxylic acid can be used in experiments when conjugation of the dye to other molecules is not necessary. The carboxylic acid group can also be activated for subsequent labeling reactions like Steglich esterification.
Chemical Information
Product Specification
Application
Computed Properties
Patents
Chemical Information
| Synonyms | BODIPY R6G; 3-(2,2-difluoro-12-phenyl-3-aza-1-azonia-2-boranuidatricyclo[7.3.0.03,7]dodeca-1(12),4,6,8,10-pentaen-4-yl)propanoic acid; BDPR6Gcarboxylicacid; 4,4-difluoro-5-phenyl-4-bora-3a,4a-diaza-s-indacene-3-propionic acid; (3-{5-[(5-phenyl-2H-pyrrol-2-ylidene-kappaN)methyl]-1H-pyrrol-2-yl-kappaN}propanoato)(difluoro)boron |
| Purity | NMR 1H, HPLC-MS (95%) |
| IUPAC Name | 3-(2,2-difluoro-12-phenyl-3-aza-1-azonia-2-boranuidatricyclo[7.3.0.03,7]dodeca-1(12),4,6,8,10-pentaen-4-yl)propanoic acid |
| SMILES | [B-]1(N2C(=CC=C2CCC(=O)O)C=C3[N+]1=C(C=C3)C4=CC=CC=C4)(F)F |
| InChI | InChI=1S/C18H15BF2N2O2/c20-19(21)22-14(9-11-18(24)25)6-7-15(22)12-16-8-10-17(23(16)19)13-4-2-1-3-5-13/h1-8,10,12H,9,11H2,(H,24,25) |
| InChIKey | RFLLOBSXBJAGST-UHFFFAOYSA-N |
| Solubility | good in DMF, DMSO, ethanol, methanol, DCM |
| Appearance | colorless solid |
Product Specification
| ε, L⋅mol-1⋅cm-1 | 70,000 |
| Fluorescence Quantum Yield | 0.96 |
| Excitation | 530 |
| Emission | 548 |
| Storage | 24 months after receival at -20°C in the dark. Transportation: at room temperature for up to 3 weeks. Avoid prolonged exposure to light. Desiccate. |
Application
BDP R6G carboxylic acid is a rhodamine-based fluorescent dye bearing a carboxylic acid handle for conjugation to biomolecules, polymers, and surfaces. In fluorescence labeling workflows, it is used to build bright, visible-range imaging reagents and to track labeled targets in microscopy and fluorescence-based assays, with performance that is commonly leveraged in dye-conjugate development and molecular staining research.
1. Fluorescent Biomolecule Labeling
BDP R6G carboxylic acid is frequently used to prepare fluorescent conjugates for protein and peptide labeling, where the carboxylic acid functionality enables downstream coupling to amine-bearing biomolecules or incorporation into labeling schemes that produce stable dye-tagged reagents. Researchers use these conjugates to visualize biomolecule localization, follow binding interactions in solution, and generate fluorescent standards for assay development. In practical workflows, the dye's rhodamine character supports robust signal generation for imaging and plate-reader readouts when conjugates are prepared at defined labeling densities.
2. Fluorescence Microscopy Staining
BDP R6G carboxylic acid is applied in fluorescence microscopy and cellular imaging studies as a dye component for staining reagents and labeled probes used to track biomolecule distribution in fixed or prepared samples. Imaging teams use dye conjugates to map where a target accumulates on cells, within extracellular matrices, or associated with biomaterial constructs, supporting workflow needs such as multicolor panel design and quantitative fluorescence readouts. The carboxylic acid handle is particularly useful for integrating the dye into conjugates used for staining protocols where a defined linkage to a targeting or structural component is required.
3. Flow Cytometry Fluorescent Tracing
BDP R6G carboxylic acid is used to create fluorescent labeling reagents for flow cytometry experiments that require consistent dye tagging of biomolecules or affinity reagents. In flow-based workflows, labeled conjugates help quantify binding or uptake signals across cell populations and support comparative studies where fluorescence intensity is used as a readout. The dye's conjugation-ready carboxylic acid functionality supports reagent development for consistent labeling chemistry, enabling reproducible staining reagents for instrument-based analysis.
4. Polymer And Surface Functionalization
BDP R6G carboxylic acid is commonly incorporated into fluorescently labeled polymers and material surfaces to generate imaging-compatible biomaterials and traceable coatings. Materials scientists use dye-functionalized polymers to visualize transport, adsorption, and spatial distribution of components on engineered substrates, including hydrogels and labware surfaces used in chemical biology experiments. The carboxylic acid group supports integration into functional material architectures where the dye must remain tethered for stable fluorescence labeling during handling and imaging.
Computed Properties
| Hydrogen Bond Donor Count | 1 |
| Hydrogen Bond Acceptor Count | 5 |
| Rotatable Bond Count | 4 |
| Exact Mass | 340.1194642 g/mol |
| Monoisotopic Mass | 340.1194642 g/mol |
| Topological Polar Surface Area | 45.2Ų |
| Heavy Atom Count | 25 |
| Formal Charge | 0 |
| Complexity | 668 |
| Isotope Atom Count | 0 |
| Defined Atom Stereocenter Count | 0 |
| Undefined Atom Stereocenter Count | 0 |
| Defined Bond Stereocenter Count | 0 |
| Undefined Bond Stereocenter Count | 0 |
| Covalently-Bonded Unit Count | 1 |
| Compound Is Canonicalized | Yes |
Patents
| Publication Number | Title | Priority Date |
|---|---|---|
| CN-114949234-A | A kind of bile-targeted drug-loaded exosome and its application and drug for treating biliary diseases | 2021-12-01 |
| CN-114949233-A | A pancreas-targeted drug-loaded exosome and its application and drug for treating pancreatic diseases | 2021-11-05 |
| CN-115025232-A | A heart-targeted drug-loaded exosome and its application and drug for treating heart disease | 2021-11-02 |
| US-2023026886-A1 | Methods for preparing polymerized matrix with controllable thickness | 2021-07-13 |
| CN-115025233-A | A lung-targeted drug-loaded exosome and a drug for its application and treatment of lung diseases | 2021-06-22 |
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