
BDP 650/665 DBCO
| Catalog Number | F01-0252 |
| Category | BODIPY |
| Molecular Formula | C44H38N5BF2O3 |
| Molecular Weight | 733.61 |
* Please be kindly noted products are not for therapeutic use. We do not sell to patients.
Product Introduction
BDP 650/665 is a bright far-red-fluorescent dye that is similar to BODIPY™ 650/665 and Cy™5 by its spectral characteristics. This high quantum yield dye is relatively non-sensitive to solvent polarity and pH changes.,Due to its significant hydrophobic properties, BDP 650/665 can be used for staining membranes, lipids, and other lipophilic compounds.,DBCO, a substituting group introduced in this molecule, is a dibenzocyclooctyne that is commonly used in copper-free Click Chemistry reactions. BDP 650/665 DBCO can react with various functionalized azides (rapidly and without specialized Cu(I) catalysts) resulting in stable dye-biomolecule conjugates.
Chemical Information
Product Specification
Application
Computed Properties
Chemical Information
| Purity | NMR 1H, HPLC-MS (95%) |
| IUPAC Name | N-[6-(2-azatricyclo[10.4.0.04,9]hexadeca-1(16),4,6,8,12,14-hexaen-10-yn-2-yl)-6-oxohexyl]-2-[4-[(E)-2-[2,2-difluoro-12-(1H-pyrrol-2-yl)-3-aza-1-azonia-2-boranuidatricyclo[7.3.0.03,7]dodeca-1(12),4,6,8,10-pentaen-4-yl]ethenyl]phenoxy]acetamide |
| SMILES | [B-]1(N2C(=CC=C2C=CC3=CC=C(C=C3)OCC(=O)NCCCCCC(=O)N4CC5=CC=CC=C5C#CC6=CC=CC=C64)C=C7[N+]1=C(C=C7)C8=CC=CN8)(F)F |
| InChI | InChI=1S/C44H38BF2N5O3/c46-45(47)51-36(21-22-37(51)29-38-23-26-42(52(38)45)40-12-8-28-48-40)20-15-32-16-24-39(25-17-32)55-31-43(53)49-27-7-1-2-14-44(54)50-30-35-11-4-3-9-33(35)18-19-34-10-5-6-13-41(34)50/h3-6,8-13,15-17,20-26,28-29,48H,1-2,7,14,27,30-31H2,(H,49,53)/b20-15+ |
| InChIKey | SMLANKIREOERQG-HMMYKYKNSA-N |
| Solubility | Good in DMF, DMSO, dichloromethane |
| Appearance | Dark blue crystals |
Product Specification
| CF260 | 0.04 |
| CF280 | 0.04 |
| Fluorescence Quantum Yield | 0.52 |
| Excitation | 649 |
| Emission | 667 |
| Storage | Storage: 24 months after receival at -20 °C in the Dark. Transportation: at room temperature for up to 3 weeks. Avoid prolonged exposure to light. |
Application
BDP 650/665 DBCO is a DBCO-functionalized BODIPY-based fluorescent labeling reagent designed for copper-free click chemistry workflows. Its BDP 650/665 fluorophore provides long-wavelength fluorescence for instrument-friendly imaging and assay readouts, while the DBCO handle enables efficient conjugation to azide-bearing biomolecules, targeting ligands, and polymer or surface platforms. This combination is commonly used to build fluorescent bioconjugates, construct labeling panels, and generate imaging reagents for microscopy and fluorescence-based analysis.
1. Biomolecule Labeling
BDP 650/665 DBCO is used to fluorescently label proteins, peptides, and other azide-functional biomolecules via strain-promoted azide-alkyne cycloaddition (SPAAC). Researchers incorporate the reagent into labeling workflows for binding studies, ligand tracking, and preparation of fluorescent conjugates for downstream assays such as fluorescence imaging and plate-based readouts. The DBCO click handle supports modular conjugation strategies where the azide-bearing partner can be prepared once and then reacted with different fluorophores to generate matched labeling reagents.
2. Fluorescent Probe Construction
BDP 650/665 DBCO serves as a key building block for fluorescent probe development in chemical biology, where long-wavelength emission helps reduce interference from shorter-wavelength autofluorescence. Teams use it to assemble probe conjugates by attaching the BDP 650/665 fluorophore to azide-containing targeting moieties, affinity reagents, or scaffold molecules. The resulting fluorescent constructs are then applied in cellular and biochemical imaging experiments, as well as in fluorescence-based characterization of binding or localization behavior of the probe conjugates.
3. Surface Functionalization
BDP 650/665 DBCO is frequently employed to generate fluorescently tagged biomaterial surfaces and engineered interfaces by clicking the dye onto azide-functionalized materials. Materials scientists and biointerface teams use it to prepare labeled hydrogels, polymer coatings, and nanoparticle surfaces for microscopy visualization and fluorescence tracking of surface-associated processes. This application is particularly valuable when a stable, covalent fluorescent tag is required for monitoring distribution, retention, or interaction of functionalized materials in complex experimental environments.
4. Fluorescence Imaging Reagents
BDP 650/665 DBCO is used to prepare imaging reagents for fluorescence microscopy and related optical workflows by covalently attaching the BDP 650/665 dye to azide-bearing targeting or labeling components. Researchers use the click-ready fluorophore conjugates for visualizing biomolecular localization, tracking labeled components in fixed or prepared samples, and building multicolor labeling schemes with long-wavelength channels. The modularity of DBCO-based conjugation supports rapid generation of imaging reagents tailored to specific experimental designs, including conjugate panels for comparative imaging studies.
Computed Properties
| Hydrogen Bond Donor Count | 2 |
| Hydrogen Bond Acceptor Count | 6 |
| Rotatable Bond Count | 12 |
| Exact Mass | 733.3035766 g/mol |
| Monoisotopic Mass | 733.3035766 g/mol |
| Topological Polar Surface Area | 82.4Ų |
| Heavy Atom Count | 55 |
| Formal Charge | 0 |
| Complexity | 1610 |
| Isotope Atom Count | 0 |
| Defined Atom Stereocenter Count | 0 |
| Undefined Atom Stereocenter Count | 0 |
| Defined Bond Stereocenter Count | 1 |
| Undefined Bond Stereocenter Count | 0 |
| Covalently-Bonded Unit Count | 1 |
| Compound Is Canonicalized | Yes |
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