BDP 650/665 azide

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BDP 650/665 azide

BDP 650/665 azide

Catalog Number F01-0009
Category BODIPY
Molecular Formula C26H24N7BF2O2
Molecular Weight 515.32
Catalog Number Size Price Quantity
F01-0009 -- $--

Product Introduction

BDP 650/665 is a bright red emitting borondipyrromethene dye, compatible with Cy5 channel found on many instruments. This is azide derivative of BDP 650/665. It can be conjugated with terminal alkynes via copper catalyzed reaction, or with cycloalkynes via copper-free Click chemistry.BDP 650/665 azide can be conjugated with various terminal alkynes using copper-catalyzed Click chemistry, or with cycloalkynes using a copper-free reaction.

Chemical Information

Purity NMR 1H, HPLC-MS (95%)
IUPAC Name N-(3-azidopropyl)-2-[4-[(E)-2-[2,2-difluoro-12-(1H-pyrrol-2-yl)-3-aza-1-azonia-2-boranuidatricyclo[7.3.0.03,7]dodeca-1(12),4,6,8,10-pentaen-4-yl]ethenyl]phenoxy]acetamide
Canonical SMILES [B-]1(N2C(=CC=C2C=CC3=CC=C(C=C3)OCC(=O)NCCCN=[N+]=[N-])C=C4[N+]1=C(C=C4)C5=CC=CN5)(F)F
InChI InChI=1S/C26H24BF2N7O2/c28-27(29)35-20(8-9-21(35)17-22-10-13-25(36(22)27)24-3-1-14-31-24)7-4-19-5-11-23(12-6-19)38-18-26(37)32-15-2-16-33-34-30/h1,3-14,17,31H,2,15-16,18H2,(H,32,37)/b7-4+
InChI Key SQHNXNWCLPYDBQ-QPJJXVBHSA-N
Solubility good in DMF, DMSO, low in water
Appearance dark colored solid
  • Product Specification
ε, L⋅mol-1⋅cm-1 94000
Fluorescence Quantum Yield 0.52
Excitation 649
Emission 667
Storage 24 months after receival at -20°C in the dark. Transportation: at room temperature for up to 3 weeks. Avoid prolonged exposure to light. Desiccate.

Computed Properties

Hydrogen Bond Donor Count 2
Hydrogen Bond Acceptor Count 7
Rotatable Bond Count 10
Exact Mass 515.2052595 g/mol
Monoisotopic Mass 515.2052595 g/mol
Topological Polar Surface Area 76.4Ų
Heavy Atom Count 38
Formal Charge 0
Complexity 1060
Isotope Atom Count 0
Defined Atom Stereocenter Count 0
Undefined Atom Stereocenter Count 0
Defined Bond Stereocenter Count 1
Undefined Bond Stereocenter Count 0
Covalently-Bonded Unit Count 1
Compound Is Canonicalized Yes
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