BDP 558/568 DBCO

Product Introduction

BDP 558/568 fluorescence maximum is in the yellow spectrum range (569 nm). This dye is an analog of such fluorophores as BODIPY™ 558/568, Cy3™, DyLight™ 549 by its spectral characteristics. It is Soluble in polar organic solvents and has good photostability and high quantum yield.,BDP 558/568 has hydrophobic properties and can be used for staining lipids, membranes, and other lipophilic compounds.,Introduced in the BDP 558/568 molecule, the cyclooctyne functional group allows entering into reactions of 1,3-dipolar cycloaddition with various substituted azides. Such reactions are promoted by ring strain and do not require copper catalysis. Thus, this method can be used for investigating various processes in living cells.,BDP 558/568 DBCO can be used for the detection of target molecules, proteins, or nucleic acids that contain azide groups by microscopy and flow cytometry.

Chemical Information
Purity	NMR 1H, HPLC-MS (95%)
IUPAC Name	N-[6-(2-azatricyclo[10.4.0.04,9]hexadeca-1(16),4,6,8,12,14-hexaen-10-yn-2-yl)-6-oxohexyl]-3-(2,2-difluoro-12-thiophen-2-yl-3-aza-1-azonia-2-boranuidatricyclo[7.3.0.03,7]dodeca-1(12),4,6,8,10-pentaen-4-yl)propanamide
Canonical SMILES	[B-]1(N2C(=CC=C2CCC(=O)NCCCCCC(=O)N3CC4=CC=CC=C4C#CC5=CC=CC=C53)C=C6[N+]1=C(C=C6)C7=CC=CS7)(F)F
InChI	InChI=1S/C37H33BF2N4O2S/c39-38(40)43-30(17-18-31(43)25-32-19-21-34(44(32)38)35-13-8-24-47-35)20-22-36(45)41-23-7-1-2-14-37(46)42-26-29-11-4-3-9-27(29)15-16-28-10-5-6-12-33(28)42/h3-6,8-13,17-19,21,24-25H,1-2,7,14,20,22-23,26H2,(H,41,45)
InChI Key	JZISDGRJVRJABA-UHFFFAOYSA-N
Solubility	Very soluble in DMF, DMSO, dichloromethane
Appearance	Brown powder with luster

Computed Properties
Hydrogen Bond Donor Count	1
Hydrogen Bond Acceptor Count	6
Rotatable Bond Count	10
Exact Mass	646.2385340 g/mol
Monoisotopic Mass	646.2385340 g/mol
Topological Polar Surface Area	85.6Ų
Heavy Atom Count	47
Formal Charge	0
Complexity	1370
Isotope Atom Count	0
Defined Atom Stereocenter Count	0
Undefined Atom Stereocenter Count	0
Defined Bond Stereocenter Count	0
Undefined Bond Stereocenter Count	0
Covalently-Bonded Unit Count	1
Compound Is Canonicalized	Yes